Identifying climatic niche shifts using coarse‐grained occurrence data: a test with non‐native freshwater fish

Aim We tested whether coarse‐grained occurrence data can be used to detect climatic niche shifts between native and non‐native ranges for a set of widely introduced freshwater fishes. Location World‐wide. Methods We used a global database of freshwater fish occurrences at the river basin scale to identify native and non‐native ranges for 18 of the most widely introduced fish species. We also examined climatic conditions within each river basin using fine‐grained climate data. We combined this information to test whether climatic niche shifts have occurred between native and non‐native ranges. We defined climatic niche shifts as instances where the ranges of a climatic variable within native and non‐native basins exhibit zero overlap. Results We detected at least one climatic niche shift for each of the 18 studied species. However, we did not detect common patterns in the thermal preference or biogeographic origin of the non‐native fish, hence suggesting a species‐specific response. Main conclusions Coarse‐grained occurrence data can be used to detect climatic niche shifts. They also enable the identification of the species experiencing niche shifts, although the mechanisms responsible for these shifts (e.g. local adaptation, dispersal limitation or physiological constraints) have yet to be determined. Furthermore, the coarse‐grained approach, which highlights regions where climatic niche shifts have occurred, can be used to select specific river basins for more detailed, fine‐grained studies.     

Complex pattern of genetic structuring in the Atlantic salmon (Salmo salar L.) of the River Foyle system in northwest Ireland: disentangling the evolutionary signal from population stochasticity

Little is known about the microevolutionary processes shaping within river population genetic structure of aquatic organisms characterized by high levels of homing and spawning site fidelity. Using a microsatellite panel, we observed complex and highly significant levels of intrariver population genetic substructure and Isolation-by-Distance, in the Atlantic salmon stock of a large river system. Two evolutionary models have been considered explaining mechanisms promoting genetic substructuring in Atlantic salmon, the member-vagrant and metapopulation models. We show that both models can be simultaneously used to explain patterns and levels of population structuring within the Foyle system. We show that anthropogenic factors have had a large influence on contemporary population structure observed. In an analytical development, we found that the frequently used estimator of genetic differentiation, F(ST), routinely underestimated genetic differentiation by a factor three to four compared to the equivalent statistic Jost's D(est) (Jost 2008). These statistics also showed a near-perfect correlation. Despite ongoing discussions regarding the usefulness of "adjusted"F(ST) statistics, we argue that these could be useful to identify and quantify qualitative differences between populations, which are important from management and conservation perspectives as an indicator of existence of biologically significant variation among tributary populations or a warning of critical environmental damage.     

Variable growth rates of the tropical estuarine fish barramundi Lates calcarifer (Bloch) under different freshwater flow conditions

Relationships between freshwater flows and growth rates of the opportunistic predatory finfish barramundi Lates calcarifer in a dry tropical estuary were examined using data from a long-term tag-recapture programme. Lagged effects were not investigated. After accounting for length at release, time at liberty and seasonal variation ( e.g. winter, spring, summer and autumn), growth rates were significantly and positively related to fresh water flowing to the estuary. Effects were present at relatively low levels of freshwater flow ( i.e. 2·15 m³ s⁻¹, the 5th percentile of the mean flow rate experienced by fish in the study during time at liberty). The analysis, although correlative, provides quantitative evidence to support the hypothesis that freshwater flows are important in driving the productivity of estuaries and can improve growth of species high in the trophic chain.     

Morphological clines in dendritic landscapes

1. In complex landscapes such as river networks, organisms usually face spatio‐temporal heterogeneity and gradients in geomorphological, water, ecological or landscape characteristics are often observed at the catchment scale. These environmental variables determine developmental conditions for larval stages of freshwater insects and influence adult phenotypic characteristics. Environmental clines are therefore expected to generate morphological clines. Such a process has the potential to drive gradual geographical change in morphology‐dependent life history traits, such as dispersal. 2. We studied the influence of aquatic and terrestrial environmental factors on morphological variations in Calopteryx splendens across the Loire drainage. To investigate these effects we took explicitly into account the hierarchical structure of the river network. 3. We analysed eight morphological traits. Results showed significant body size variation between tributaries and the presence of a morphological cline at the drainage scale. We observed an effect of pH and water temperature on body size. Individuals in downstream sites were larger than individuals in upstream sites, and adults whose larval stages were exposed to alkaline pH and high temperatures during summer were larger. 4. Body size affects flight abilities in insects. Thus, our results suggest that morphological clines may generate an asymmetric dispersal pattern along the downstream–upstream axis, downstream populations dispersing farther than upstream ones. Such a process is expected to influence population genetic structure at the drainage scale if larval drift and floods do not balance an asymmetrical dispersal pattern of adults along the downstream–upstream gradient. To assess the influence of environmental gradients on the variation of life history traits it is important to understand the population biology of freshwater insects, and more generally of riverine organisms. It is also essential to integrate such data in conservation or restoration programmes.     

Terrestrial vegetation and the seasonal cycleof dissolved silica in a southern New Englandcoastal river

The Pawcatuck river watershed (797 km²) is located in southern Rhode Island and northeastern Connecticut. The predominant lithology of the area is granite, and over 60% of the watershed remains forested with mixed hardwoods (primarily oak) and eastern white pine. As part of a larger study of nutrient and sediment exports from the watershed to Little Narragansett Bay, we measured dissolved silica (SiO₂) (DSi) concentrations at the river mouth over 70 times between January 14, 2002 and November 29, 2002. Annual export of DSi during our study was 40 × 10⁶ mol or 50 kmol km⁻². The United States Geological Survey (USGS) obtained DSi concentrations at this site, at varying frequencies, from 1978 to the present, which allowed for a historical comparison of this study with previous years. River DSi concentrations exhibited a strong seasonal signal that did not vary in a regular way with water discharge or water temperature. DSi and dissolved inorganic nitrogen (DIN) concentrations were significantly related over the annual cycle (p<0.0001) and both decreased substantially during the spring. Dissolved inorganic phosphorus (DIP) did not covary at any time with silica or nitrogen, suggesting that in-stream biological uptake was not responsible for the seasonal decline in silica. The spring decline in river silica concentrations may be due to silica uptake by terrestrial vegetation. We estimate a net forest silica accretion rate of 41 kmol km⁻² y⁻¹, a value that is stoichiometrically consistent with other measurements of net carbon accretion in nearby forests.     

Does Stream Morphology Predict the Home Range Size in Burbot?

Synopsis To determine whether burbot occupy defined home range in rivers, we radio-tracked individuals in the Ohře River, Czech Republic. We also tested the hypothesis that the size of burbot home range would correlate with the fish mass. Burbot's strong attraction to suitable refuges was the basis for our second hypotheses, that its diurnal behavior would reflect refuge availability in the riverine environment. To test these hypotheses, we analyzed data on fish movements in relation to depth, velocity, substratum size and river slope. During the night, burbot preferred deeper areas with lower slope and finer substrates than during daylight hours. The home range was smaller in areas with low or zero slopes, and significantly increased with increasing river slope. There was no relationship between home range size and fish mass. River slope appeared to be the main predictor of the burbot's home range size.     

Habitat structural complexity and morphological diversity of fish assemblages in a Neotropical floodplain river

High species richness and evenness in structurally complex habitats has been hypothesized to be associated with niche partitioning. To test this idea, relationships between habitat structural complexity in river littoral-zone habitats and morphological diversity of tropical fishes were examined in the Cinaruco River, Venezuela. Six habitat attributes were quantified in 45 sites spanning a range of structural complexity. Fishes were collected during day and night to estimate species density and relative abundances at each site. Twenty-two morphological variables were measured for each species. Principal components analysis (PCA) of physical habitat data yielded two axes that modeled >80% of variation across sites. The first two axes from PCA of fish morphological variables modeled >70% of variation. Species density during both day and night was negatively associated with flow velocity and positively associated with habitat complexity. Similarity of day and night samples from the same site was significantly greater for sites with high habitat complexity and low flow. In general, mean local assemblage morphological PC scores were not significantly associated with habitat PC scores. Average, maximum, and standard deviation of morphological Euclidean distances of local assemblages revealed positive associations with structural complexity and negative associations with flow. These relationships held even when the positive relationship of species density was statistically removed from assemblage morphological patterns. Findings suggest that both species niche compression and assemblage niche space increase when habitat complexity is greater and flow velocity is lower in this tropical lowland river.Electronic Supplementary Material Supplementary material is available for this article at     

Parasite species coexistence and limiting similarity: a multiscale look at phylogenetic,functional and reproductive distances

The factors that control biodiversity have been the focus of numerous recent investigations; these include species interactions, speciation, environmental gradients and heterogeneity, all of these operating differently at each observation scale. We used a null model to examine the influence of two forces shaping the community structure of Dactylogyrus species parasitic on roach (Rutilus rutilus) gills: interspecific competition that might prevent the coexistence of the most similar species and environmental filters that might result in the most similar species coexisting together. The study was carried out on two sets of fish from two different localities in the Morava river basin (Czech Republic) to evaluate the consistency of the results across host populations, and at three different scales of observation to test for the scale dependence of assembly rules. In decreasing order, from largest to smallest, the three spatial scales investigated were: the individual fish, the individual gill arch and individual sections of each gill arch. The similarity between pairs of parasite species was measured using three different criteria: (1) phylogeny, (2) quantitative functional traits consisting of parasite size and morphometric measurements of the attachment organ’s sclerotized parts and (3) qualitative attributes of reproductive organs. First, our study reveals a strong conservatism of ecological characters for the nine Dactylogyrus parasite species, in particular regarding the attributes of their copulatory organs. Second, our study did not find any limitation of similarity among coexisting Dactylogyrus species due to interspecific competition, irrespective of the scale and the similarity measures considered. Conversely, our results support the niche filtering hypothesis, preventing the co-occurrence of species too dissimilar from one another. This process is particularly apparent at the scale of the individual fish and for functional traits associated with the hard parts of the parasites’ attachment organs. In both localities, the Dactylogyrus species that occur on the same fish individuals tend to have similar values for the haptor dimensions. Our study supports previous studies on monogenean parasite communities indicating a weak influence of competition as a structuring force, but it goes a step further by identifying environmental filtering as a key process shaping these communities.     

Cofán Indians’ Monitoring of Freshwater Turtles in Zábalo,Ecuador

The Cofán Indians of Aguarico and Zábalo Rivers in Ecuador in 1990 began a turtle recuperation effort by raising turtle hatchlings (Podocnemis expansa and P. unifilis) in small pools. To evaluate the effectiveness of this program, the Cofán developed and tested three methods to document changes in the populations of turtles. The first method consisted of interviews with people from neighbouring communities about their perceptions of changes in turtle abundance. The second method was a direct count of turtles observed along the rivers from canoe. The third method was an indirect count, involving turtle nest censusing along community beaches. Two of the methods yielded numerical, statistically positive turtle population trends. The turtle program has influenced the community's perception of turtle conservation issues so that, instead of hunting the adults and eggs, they now protect them. The training in record-keeping permits them to make a transparent history of the equitability of access to the turtle egg resource. The Cofán monitoring experience strengthened their successful petition to the Ecuadorian government for the rights to manage their territorial lands within the Cuyabeno Wildlife Reserve, and to receive protected area status and management rights to other ancestral lands. The experience gained by the Zábalo monitors is now serving as a model for the design and implementation of the park monitoring system of the newly-established Cofán Park Ranger Corps, which will be patrolling three Ecuadorian Ecological Reserves which overlap Cofán inhabited areas.